CoolerΒΆ
Cooler is a Python support library for .cool/.mcool files: an efficient storage format for high resolution genomic interaction matrices.
The cooler package aims to facilitate:
Creation, aggregation and manipulation of genomically-labeled sparse matrices.
Querying: sequential and range query patterns and tabular and sparse/dense array retrieval.
Scalable out-of-core operations on the data.
Data export and visualization.
Follow cooler development on GitHub.
Contents:
- Quickstart
- What is cooler?
- Concepts
- Schema
- API Reference
- CLI Reference
- Quick reference
- cooler cload
- cooler cload pairs
- cooler cload pairix
- cooler cload tabix
- cooler cload hiclib
- cooler load
- cooler merge
- cooler coarsen
- cooler zoomify
- cooler balance
- cooler info
- cooler dump
- cooler show
- cooler tree
- cooler attrs
- cooler ls
- cooler cp
- cooler mv
- cooler ln
- cooler makebins
- cooler digest
- cooler csort
- Release notes