Cooler is a Python support library for .cool files: an efficient storage format for high resolution genomic interaction matrices.
The cooler package aims to provide the following functionality:
- Build contact matrices at any genomic resolution.
- Query contact matrices.
- Export and visualize the data.
- Perform scalable out-of-core operations on the data.
- Provide a clean and well-documented Python API to interact with the data.
Follow cooler development on GitHub.
- Data model
- API Reference
- CLI Reference