API Reference

Quick reference

Cooler class

cooler.Cooler
cooler.Cooler.binsize
cooler.Cooler.chromnames
cooler.Cooler.chromsizes
cooler.Cooler.bins
cooler.Cooler.pixels
cooler.Cooler.matrix
cooler.Cooler.open
cooler.Cooler.info
cooler.Cooler.offset
cooler.Cooler.extent

Creation/reduction

cooler.create_cooler
cooler.merge_coolers
cooler.coarsen_cooler
cooler.zoomify_cooler

Manipulation

cooler.annotate
cooler.balance_cooler
cooler.rename_chroms

File operations

cooler.fileops.is_cooler
cooler.fileops.is_multires_file
cooler.fileops.list_coolers
cooler.fileops.cp
cooler.fileops.mv
cooler.fileops.ln

Sandbox

cooler.sandbox.dask.read_table

cooler


cooler.create

cooler.fileops

cooler.util

cooler.sandbox